Thanks for asking about that. It's been on my ToDo list for a while so I just did something about it. Yes, the best way is to shut down services and processes before removing power.
So now, there is a "System shutdown" option in the System menu.
You'll need to update the pi-stomp software:
https://treefallsound.com/wiki/doku.php?id=software_installation#software_updatesThen, when you're ready to shut it off, long-press the encoder until you get the System Menu, then scroll to "System shutdown". The "pi Stomp" splash screen should appear (Red text), then all services and processes will be shut down gracefully. Once the LCD goes all white, you can remove power. When booting, the splash screen text will be Green so you know whether it's booting up or shutting down.