There was an issue that I fixed on beta last week. Without that fix, it was possible for the screen to blank without any obvious error from the pi-stomp service. If you're still having that issue, I suggest you update your software.
To do that, you can run:
ps-stop
git pull
The change I made requires an extra package that setup.sh would install, but to avoid you reinstalling, you could just add the package manually yourself:
sudo /usr/bin/pip3 install RPi.version
Then restart with ps-run
Regarding your other questions:
Trigger bypass via MIDI? Not currently. Would require that pi-Stomp be a MIDI listener which it currently is not. Mod does the listening. Because of that, MOD WILL reflect plugin bypass or parameter tweaks that were mapped to a MIDI controller (pi-Stomp or external controller connected via DIN/USB/OSC).